2016/11/06 09:51:43: DEBUG Enqueuing command:
#TASK tags=Sample_5
picard -Xmx2g SortSam \
INPUT=/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/picard/Sample_5_cleaned.aligned.bam \
O=/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/picard/Sample_5_csorted.cleaned.aligned.bam \
SO=coordinate \
TMP_DIR=/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/bowtie2/tmp
2016/11/06 09:51:52: INFO Total execution time 0 years, 00 months, 0 days, 00 hours, 00 minutes, 09 seconds