Lab Notebook

019_gatk_haplotypecaller CMD_019 005

DateTime: 2016-11-06T14:05:41

ProcessID: 31706

SchedulerID: 24608

2016/11/06 14:05:42: ERROR INFO 14:05:41,239 ProgressMeter - CHR_HSCHR4_1_CTG4:99671200 3.1110506141E10 2.2 h 0.0 s 71.9% 3.1 h 51.5 m
2016/11/06 14:06:11: ERROR INFO 14:06:11,267 ProgressMeter - CHR_HSCHR4_1_CTG6:31008421 3.1300727898E10 2.2 h 0.0 s 72.1% 3.1 h 51.0 m
2016/11/06 14:06:41: ERROR INFO 14:06:41,281 ProgressMeter - CHR_HSCHR4_1_CTG6:151460398 3.1300727898E10 2.2 h 0.0 s 72.4% 3.1 h 50.5 m
2016/11/06 14:07:11: ERROR INFO 14:07:11,331 ProgressMeter - CHR_HSCHR4_1_CTG8_1:74628994 3.1490952736E10 2.2 h 0.0 s 72.7% 3.1 h 50.0 m
2016/11/06 14:07:41: ERROR INFO 14:07:41,349 ProgressMeter - CHR_HSCHR4_1_CTG8_1:189079133 3.1490952736E10 2.2 h 0.0 s 72.9% 3.1 h 49.6 m
2016/11/06 14:08:11: ERROR INFO 14:08:11,389 ProgressMeter - CHR_HSCHR4_1_CTG9:112898500 3.1681171574E10 2.2 h 0.0 s 73.2% 3.1 h 49.1 m
2016/11/06 14:08:41: ERROR INFO 14:08:41,419 ProgressMeter - CHR_HSCHR4_2_CTG12:38600385 3.1871268506E10 2.2 h 0.0 s 73.5% 3.1 h 48.6 m
2016/11/06 14:09:11: ERROR INFO 14:09:11,470 ProgressMeter - CHR_HSCHR4_2_CTG12:161458505 3.1871268506E10 2.3 h 0.0 s 73.8% 3.1 h 48.1 m
2016/11/06 14:09:41: ERROR INFO 14:09:41,487 ProgressMeter - CHR_HSCHR4_3_CTG12:88677945 3.2061475303E10 2.3 h 0.0 s 74.0% 3.1 h 47.6 m
2016/11/06 14:10:11: ERROR INFO 14:10:11,509 ProgressMeter - CHR_HSCHR4_4_CTG12:13517005 3.2251693331E10 2.3 h 0.0 s 74.3% 3.1 h 47.1 m
2016/11/06 14:10:41: ERROR INFO 14:10:41,540 ProgressMeter - CHR_HSCHR4_4_CTG12:139614892 3.2251693331E10 2.3 h 0.0 s 74.6% 3.1 h 46.6 m
2016/11/06 14:11:11: ERROR INFO 14:11:11,619 ProgressMeter - CHR_HSCHR4_5_CTG12:66212019 3.2441914035E10 2.3 h 0.0 s 74.9% 3.1 h 46.1 m
2016/11/06 14:11:41: ERROR INFO 14:11:41,647 ProgressMeter - CHR_HSCHR4_5_CTG12:187099166 3.2441914035E10 2.3 h 0.0 s 75.1% 3.1 h 45.6 m
2016/11/06 14:12:11: ERROR INFO 14:12:11,678 ProgressMeter - CHR_HSCHR4_6_CTG12:109214362 3.2632133597E10 2.3 h 0.0 s 75.4% 3.1 h 45.1 m
2016/11/06 14:12:41: ERROR INFO 14:12:41,699 ProgressMeter - CHR_HSCHR4_7_CTG12:29967895 3.282235213E10 2.3 h 0.0 s 75.6% 3.1 h 44.6 m
2016/11/06 14:13:11: ERROR INFO 14:13:11,708 ProgressMeter - CHR_HSCHR4_7_CTG12:154794534 3.282235213E10 2.3 h 0.0 s 75.9% 3.1 h 44.1 m
2016/11/06 14:13:41: ERROR INFO 14:13:41,737 ProgressMeter - CHR_HSCHR5_1_CTG1:81383919 3.3012577271E10 2.3 h 0.0 s 76.2% 3.1 h 43.6 m
2016/11/06 14:14:11: ERROR INFO 14:14:11,758 ProgressMeter - CHR_HSCHR5_1_CTG1_1:14484708 3.3194135673E10 2.3 h 0.0 s 76.5% 3.1 h 43.1 m
2016/11/06 14:14:41: ERROR INFO 14:14:41,777 ProgressMeter - CHR_HSCHR5_1_CTG1_1:140426282 3.3194135673E10 2.3 h 0.0 s 76.8% 3.1 h 42.6 m
2016/11/06 14:15:11: ERROR INFO 14:15:11,797 ProgressMeter - CHR_HSCHR5_1_CTG5:78560351 3.3374999243E10 2.4 h 0.0 s 77.0% 3.1 h 42.1 m
2016/11/06 14:15:41: ERROR INFO 14:15:41,858 ProgressMeter - CHR_HSCHR5_2_CTG1:15644036 3.3556542979E10 2.4 h 0.0 s 77.3% 3.1 h 41.6 m
2016/11/06 14:16:11: ERROR INFO 14:16:11,879 ProgressMeter - CHR_HSCHR5_2_CTG1:135658935 3.3556542979E10 2.4 h 0.0 s 77.6% 3.1 h 41.1 m
2016/11/06 14:16:41: ERROR INFO 14:16:41,918 ProgressMeter - CHR_HSCHR5_2_CTG1_1:70734649 3.3738090118E10 2.4 h 0.0 s 77.9% 3.1 h 40.6 m
2016/11/06 14:17:11: ERROR INFO 14:17:11,948 ProgressMeter - CHR_HSCHR5_2_CTG5:9191800 3.391884368E10 2.4 h 0.0 s 78.1% 3.1 h 40.1 m
2016/11/06 14:17:41: ERROR INFO 14:17:41,980 ProgressMeter - CHR_HSCHR5_2_CTG5:133970200 3.391884368E10 2.4 h 0.0 s 78.4% 3.1 h 39.6 m
2016/11/06 14:18:12: ERROR INFO 14:18:12,018 ProgressMeter - CHR_HSCHR5_3_CTG1:69583987 3.4100385886E10 2.4 h 0.0 s 78.7% 3.1 h 39.1 m
2016/11/06 14:18:42: ERROR INFO 14:18:42,029 ProgressMeter - CHR_HSCHR5_3_CTG1_1:2883091 3.4281928381E10 2.4 h 0.0 s 78.9% 3.1 h 38.6 m
2016/11/06 14:19:12: ERROR INFO 14:19:12,077 ProgressMeter - CHR_HSCHR5_3_CTG1_1:129443915 3.4281928381E10 2.4 h 0.0 s 79.2% 3.1 h 38.0 m
2016/11/06 14:19:42: ERROR INFO 14:19:42,107 ProgressMeter - CHR_HSCHR5_3_CTG5:66546132 3.4463483246E10 2.4 h 0.0 s 79.5% 3.1 h 37.5 m
2016/11/06 14:20:12: ERROR INFO 14:20:12,149 ProgressMeter - CHR_HSCHR5_4_CTG1:494555 3.4645021815E10 2.4 h 0.0 s 79.8% 3.1 h 37.1 m
2016/11/06 14:20:42: ERROR INFO 14:20:42,188 ProgressMeter - CHR_HSCHR5_4_CTG1:125387618 3.4645021815E10 2.4 h 0.0 s 80.1% 3.1 h 36.5 m
2016/11/06 14:21:12: ERROR INFO 14:21:12,218 ProgressMeter - CHR_HSCHR5_4_CTG1_1:64984405 3.4826559249E10 2.5 h 0.0 s 80.3% 3.1 h 36.0 m
2016/11/06 14:21:42: ERROR INFO 14:21:42,248 ProgressMeter - CHR_HSCHR5_5_CTG1:5618623 3.500810553E10 2.5 h 0.0 s 80.6% 3.1 h 35.5 m
2016/11/06 14:22:12: ERROR INFO 14:22:12,288 ProgressMeter - CHR_HSCHR5_5_CTG1:125883314 3.500810553E10 2.5 h 0.0 s 80.9% 3.1 h 35.0 m

2016/11/06 14:23:12: ERROR INFO 14:23:12,348 ProgressMeter - CHR_HSCHR5_6_CTG1:181540245 3.5189645463E10 2.5 h 0.0 s 81.4% 3.1 h 34.0 m
2016/11/06 14:23:42: ERROR INFO 14:23:42,369 ProgressMeter - CHR_HSCHR5_7_CTG1:119153660 3.5371185708E10 2.5 h 0.0 s 81.7% 3.1 h 33.5 m
2016/11/06 14:24:12: ERROR INFO 14:24:12,394 ProgressMeter - CHR_HSCHR6_1_CTG2:52679852 3.555273044E10 2.5 h 0.0 s 82.0% 3.1 h 33.0 m
2016/11/06 14:24:42: ERROR INFO 14:24:42,418 ProgressMeter - CHR_HSCHR6_1_CTG2:168011548 3.555273044E10 2.5 h 0.0 s 82.3% 3.1 h 32.5 m
2016/11/06 14:25:12: ERROR INFO 14:25:12,458 ProgressMeter - CHR_HSCHR6_1_CTG3:111572124 3.5723564251E10 2.5 h 0.0 s 82.5% 3.1 h 32.0 m
2016/11/06 14:25:42: ERROR INFO 14:25:42,487 ProgressMeter - CHR_HSCHR6_1_CTG4:58052699 3.5894400482E10 2.5 h 0.0 s 82.8% 3.1 h 31.5 m
2016/11/06 14:26:12: ERROR INFO 14:26:12,497 ProgressMeter - CHR_HSCHR6_1_CTG5:10163857 3.6065209089E10 2.5 h 0.0 s 83.1% 3.1 h 31.0 m
2016/11/06 14:26:42: ERROR INFO 14:26:42,519 ProgressMeter - CHR_HSCHR6_1_CTG5:130161636 3.6065209089E10 2.5 h 0.0 s 83.3% 3.1 h 30.5 m
2016/11/06 14:27:12: ERROR INFO 14:27:12,587 ProgressMeter - CHR_HSCHR6_1_CTG6:74662049 3.6236024391E10 2.6 h 0.0 s 83.6% 3.1 h 30.0 m
2016/11/06 14:27:42: ERROR INFO 14:27:42,619 ProgressMeter - CHR_HSCHR6_1_CTG7:16896880 3.6406843188E10 2.6 h 0.0 s 83.9% 3.1 h 29.6 m
2016/11/06 14:28:12: ERROR INFO 14:28:12,659 ProgressMeter - CHR_HSCHR6_1_CTG7:135534299 3.6406843188E10 2.6 h 0.0 s 84.1% 3.1 h 29.1 m
2016/11/06 14:28:42: ERROR INFO 14:28:42,687 ProgressMeter - CHR_HSCHR6_1_CTG8:84240645 3.6577655755E10 2.6 h 0.0 s 84.4% 3.1 h 28.6 m
2016/11/06 14:29:12: ERROR INFO 14:29:12,719 ProgressMeter - CHR_HSCHR6_1_CTG9:33652754 3.674846587E10 2.6 h 0.0 s 84.7% 3.1 h 28.0 m
2016/11/06 14:29:42: ERROR INFO 14:29:42,767 ProgressMeter - CHR_HSCHR6_1_CTG9:154658603 3.674846587E10 2.6 h 0.0 s 85.0% 3.1 h 27.5 m
2016/11/06 14:30:12: ERROR INFO 14:30:12,788 ProgressMeter - CHR_HSCHR6_8_CTG1:105892065 3.6919281453E10 2.6 h 0.0 s 85.3% 3.1 h 27.0 m
2016/11/06 14:30:42: ERROR INFO 14:30:42,818 ProgressMeter - CHR_HSCHR6_MHC_APD_CTG1:56877266 3.7090094505E10 2.6 h 0.0 s 85.5% 3.1 h 26.5 m
2016/11/06 14:31:12: ERROR INFO 14:31:12,834 ProgressMeter - CHR_HSCHR6_MHC_COX_CTG1:5805805 3.7260939549E10 2.6 h 0.0 s 85.8% 3.1 h 26.0 m
2016/11/06 14:31:42: ERROR INFO 14:31:42,868 ProgressMeter - CHR_HSCHR6_MHC_COX_CTG1:124594686 3.7260939549E10 2.6 h 0.0 s 86.1% 3.1 h 25.5 m
2016/11/06 14:32:12: ERROR INFO 14:32:12,897 ProgressMeter - CHR_HSCHR6_MHC_DBB_CTG1:68348879 3.7431667147E10 2.6 h 0.0 s 86.4% 3.1 h 25.0 m
2016/11/06 14:32:42: ERROR INFO 14:32:42,958 ProgressMeter - CHR_HSCHR6_MHC_MANN_CTG1:13043201 3.7602451045E10 2.6 h 0.0 s 86.6% 3.1 h 24.5 m
2016/11/06 14:33:12: ERROR INFO 14:33:12,979 ProgressMeter - CHR_HSCHR6_MHC_MANN_CTG1:136642300 3.7602451045E10 2.7 h 0.0 s 86.9% 3.1 h 24.0 m
2016/11/06 14:33:43: ERROR INFO 14:33:43,037 ProgressMeter - CHR_HSCHR6_MHC_MCF_CTG1:83676554 3.7773410874E10 2.7 h 0.0 s 87.2% 3.1 h 23.5 m