Lab Notebook

019_gatk_haplotypecaller CMD_019 004

DateTime: 2016-11-06T13:37:09

ProcessID: 31706

SchedulerID: 24608

2016/11/06 13:37:09: ERROR INFO 13:37:08,537 ProgressMeter - CHR_HSCHR2_1_CTG15:10645339 2.4356718734E10 103.1 m 0.0 s 56.1% 3.1 h 80.7 m
2016/11/06 13:37:38: ERROR INFO 13:37:38,598 ProgressMeter - CHR_HSCHR2_1_CTG15:137273283 2.4356718734E10 103.6 m 0.0 s 56.4% 3.1 h 80.1 m
2016/11/06 13:38:08: ERROR INFO 13:38:08,619 ProgressMeter - CHR_HSCHR2_1_CTG5:16885271 2.4598917638E10 104.1 m 0.0 s 56.7% 3.1 h 79.6 m
2016/11/06 13:38:38: ERROR INFO 13:38:38,649 ProgressMeter - CHR_HSCHR2_1_CTG5:133524100 2.4598917638E10 104.7 m 0.0 s 57.0% 3.1 h 79.1 m
2016/11/06 13:39:09: ERROR INFO 13:39:09,138 ProgressMeter - CHR_HSCHR2_1_CTG7:235131 2.48411172E10 105.2 m 0.0 s 57.2% 3.1 h 78.7 m
2016/11/06 13:39:39: ERROR INFO 13:39:39,160 ProgressMeter - CHR_HSCHR2_1_CTG7:124321081 2.48411172E10 105.7 m 0.0 s 57.5% 3.1 h 78.1 m
2016/11/06 13:40:09: ERROR INFO 13:40:09,198 ProgressMeter - CHR_HSCHR2_1_CTG7_2:2884013 2.508331074E10 106.2 m 0.0 s 57.8% 3.1 h 77.6 m
2016/11/06 13:40:39: ERROR INFO 13:40:39,227 ProgressMeter - CHR_HSCHR2_1_CTG7_2:122588882 2.508331074E10 106.7 m 0.0 s 58.0% 3.1 h 77.1 m
2016/11/06 13:41:09: ERROR INFO 13:41:09,249 ProgressMeter - CHR_HSCHR2_1_CTG7_2:242210518 2.508331074E10 107.2 m 0.0 s 58.3% 3.1 h 76.6 m
2016/11/06 13:41:39: ERROR INFO 13:41:39,289 ProgressMeter - CHR_HSCHR2_2_CTG1:123258665 2.5325521258E10 107.7 m 0.0 s 58.6% 3.1 h 76.0 m
2016/11/06 13:42:09: ERROR INFO 13:42:09,318 ProgressMeter - CHR_HSCHR2_2_CTG15:3624117 2.5567719604E10 108.2 m 0.0 s 58.9% 3.1 h 75.5 m
2016/11/06 13:42:39: ERROR INFO 13:42:39,357 ProgressMeter - CHR_HSCHR2_2_CTG15:120591578 2.5567719604E10 108.7 m 0.0 s 59.2% 3.1 h 75.0 m
2016/11/06 13:43:09: ERROR INFO 13:43:09,408 ProgressMeter - CHR_HSCHR2_2_CTG15:237196900 2.5567719604E10 109.2 m 0.0 s 59.4% 3.1 h 74.5 m
2016/11/06 13:43:39: ERROR INFO 13:43:39,432 ProgressMeter - CHR_HSCHR2_2_CTG7:118129900 2.5809918148E10 109.7 m 0.0 s 59.7% 3.1 h 74.0 m
2016/11/06 13:44:09: ERROR INFO 13:44:09,497 ProgressMeter - CHR_HSCHR2_2_CTG7_2:70798 2.605214166E10 110.2 m 0.0 s 60.0% 3.1 h 73.5 m
2016/11/06 13:44:39: ERROR INFO 13:44:39,517 ProgressMeter - CHR_HSCHR2_2_CTG7_2:121068298 2.605214166E10 110.7 m 0.0 s 60.3% 3.1 h 72.9 m
2016/11/06 13:45:09: ERROR INFO 13:45:09,538 ProgressMeter - CHR_HSCHR2_2_CTG7_2:241309456 2.605214166E10 111.2 m 0.0 s 60.5% 3.1 h 72.4 m
2016/11/06 13:45:39: ERROR INFO 13:45:39,548 ProgressMeter - CHR_HSCHR2_3_CTG1:121684739 2.6294341269E10 111.7 m 0.0 s 60.8% 3.1 h 71.9 m
2016/11/06 13:46:09: ERROR INFO 13:46:09,578 ProgressMeter - CHR_HSCHR2_3_CTG15:1564783 2.6536536895E10 112.2 m 0.0 s 61.1% 3.1 h 71.4 m
2016/11/06 13:46:39: ERROR INFO 13:46:39,607 ProgressMeter - CHR_HSCHR2_3_CTG15:122772972 2.6536536895E10 112.7 m 0.0 s 61.4% 3.1 h 70.9 m
2016/11/06 13:47:09: ERROR INFO 13:47:09,627 ProgressMeter - CHR_HSCHR2_3_CTG15:242194292 2.6536536895E10 113.2 m 0.0 s 61.7% 3.1 h 70.3 m
2016/11/06 13:47:39: ERROR INFO 13:47:39,727 ProgressMeter - CHR_HSCHR2_3_CTG7_2:124173857 2.6778731187E10 113.7 m 0.0 s 61.9% 3.1 h 69.8 m
2016/11/06 13:48:09: ERROR INFO 13:48:09,747 ProgressMeter - CHR_HSCHR2_4_CTG1:6017192 2.7020925744E10 114.2 m 0.0 s 62.2% 3.1 h 69.3 m
2016/11/06 13:48:39: ERROR INFO 13:48:39,817 ProgressMeter - CHR_HSCHR2_4_CTG1:127262833 2.7020925744E10 114.7 m 0.0 s 62.5% 3.1 h 68.8 m
2016/11/06 13:49:10: ERROR INFO 13:49:10,038 ProgressMeter - CHR_HSCHR2_4_CTG7_2:245437 2.726311682E10 115.2 m 0.0 s 62.8% 3.1 h 68.3 m
2016/11/06 13:49:40: ERROR INFO 13:49:40,058 ProgressMeter - CHR_HSCHR2_4_CTG7_2:126447247 2.726311682E10 115.7 m 0.0 s 63.1% 3.1 h 67.7 m
2016/11/06 13:50:10: ERROR INFO 13:50:10,088 ProgressMeter - CHR_HSCHR2_5_CTG7_2:7890134 2.7505313409E10 116.2 m 0.0 s 63.4% 3.1 h 67.2 m
2016/11/06 13:50:40: ERROR INFO 13:50:40,099 ProgressMeter - CHR_HSCHR2_5_CTG7_2:126824532 2.7505313409E10 116.7 m 0.0 s 63.6% 3.1 h 66.7 m
2016/11/06 13:51:10: ERROR INFO 13:51:10,159 ProgressMeter - CHR_HSCHR2_5_CTG7_2:242199685 2.7505313409E10 117.2 m 0.0 s 63.9% 3.1 h 66.2 m
2016/11/06 13:51:40: ERROR INFO 13:51:40,197 ProgressMeter - CHR_HSCHR3_1_CTG1:116633737 2.7747513094E10 117.7 m 0.0 s 64.2% 3.1 h 65.7 m
2016/11/06 13:52:10: ERROR INFO 13:52:10,227 ProgressMeter - CHR_HSCHR3_1_CTG2_1:36598039 2.7945810574E10 118.2 m 0.0 s 64.4% 3.1 h 65.2 m
2016/11/06 13:52:40: ERROR INFO 13:52:40,243 ProgressMeter - CHR_HSCHR3_1_CTG2_1:157633643 2.7945810574E10 118.7 m 0.0 s 64.7% 3.1 h 64.7 m
2016/11/06 13:53:10: ERROR INFO 13:53:10,268 ProgressMeter - CHR_HSCHR3_1_CTG3:71190100 2.8144116671E10 119.2 m 0.0 s 65.0% 3.1 h 64.2 m
2016/11/06 13:53:40: ERROR INFO 13:53:40,279 ProgressMeter - CHR_HSCHR3_1_CTG3:193482079 2.8144116671E10 119.7 m 0.0 s 65.3% 3.1 h 63.7 m

2016/11/06 13:54:40: ERROR INFO 13:54:40,341 ProgressMeter - CHR_HSCHR3_2_CTG3:34471294 2.8540718289E10 2.0 h 0.0 s 65.8% 3.1 h 62.7 m
2016/11/06 13:55:10: ERROR INFO 13:55:10,418 ProgressMeter - CHR_HSCHR3_2_CTG3:152480742 2.8540718289E10 2.0 h 0.0 s 66.1% 3.1 h 62.2 m
2016/11/06 13:55:40: ERROR INFO 13:55:40,439 ProgressMeter - CHR_HSCHR3_3_CTG1:72708911 2.873901525E10 2.0 h 0.0 s 66.3% 3.1 h 61.7 m
2016/11/06 13:56:10: ERROR INFO 13:56:10,477 ProgressMeter - CHR_HSCHR3_3_CTG1:198300110 2.873901525E10 2.0 h 0.0 s 66.6% 3.1 h 61.2 m
2016/11/06 13:56:40: ERROR INFO 13:56:40,517 ProgressMeter - CHR_HSCHR3_3_CTG2_1:115418543 2.893731536E10 2.0 h 0.0 s 66.9% 3.1 h 60.7 m
2016/11/06 13:57:10: ERROR INFO 13:57:10,567 ProgressMeter - CHR_HSCHR3_3_CTG3:32571276 2.9135615781E10 2.1 h 0.0 s 67.2% 3.1 h 60.2 m
2016/11/06 13:57:40: ERROR INFO 13:57:40,603 ProgressMeter - CHR_HSCHR3_3_CTG3:160997281 2.9135615781E10 2.1 h 0.0 s 67.5% 3.1 h 59.6 m
2016/11/06 13:58:10: ERROR INFO 13:58:10,618 ProgressMeter - CHR_HSCHR3_4_CTG2_1:77402500 2.9333909004E10 2.1 h 0.0 s 67.7% 3.1 h 59.2 m
2016/11/06 13:58:40: ERROR INFO 13:58:40,668 ProgressMeter - CHR_HSCHR3_4_CTG2_1:196970704 2.9333909004E10 2.1 h 0.0 s 68.0% 3.1 h 58.7 m
2016/11/06 13:59:10: ERROR INFO 13:59:10,707 ProgressMeter - CHR_HSCHR3_4_CTG3:114971200 2.9532210387E10 2.1 h 0.0 s 68.3% 3.1 h 58.2 m
2016/11/06 13:59:40: ERROR INFO 13:59:40,739 ProgressMeter - CHR_HSCHR3_5_CTG2_1:34942913 2.9730507254E10 2.1 h 0.0 s 68.5% 3.1 h 57.7 m
2016/11/06 14:00:10: ERROR INFO 14:00:10,808 ProgressMeter - CHR_HSCHR3_5_CTG2_1:152973773 2.9730507254E10 2.1 h 0.0 s 68.8% 3.1 h 57.2 m
2016/11/06 14:00:40: ERROR INFO 14:00:40,847 ProgressMeter - CHR_HSCHR3_5_CTG3:70783891 2.9928807848E10 2.1 h 0.0 s 69.1% 3.1 h 56.7 m
2016/11/06 14:01:10: ERROR INFO 14:01:10,880 ProgressMeter - CHR_HSCHR3_5_CTG3:198162473 2.9928807848E10 2.1 h 0.0 s 69.4% 3.1 h 56.1 m
2016/11/06 14:01:40: ERROR INFO 14:01:40,946 ProgressMeter - CHR_HSCHR3_6_CTG3:117502900 3.0127101633E10 2.1 h 0.0 s 69.6% 3.1 h 55.7 m
2016/11/06 14:02:11: ERROR INFO 14:02:10,978 ProgressMeter - CHR_HSCHR3_7_CTG3:36155735 3.0325396554E10 2.1 h 0.0 s 69.9% 3.1 h 55.2 m
2016/11/06 14:02:41: ERROR INFO 14:02:41,008 ProgressMeter - CHR_HSCHR3_7_CTG3:165481940 3.0325396554E10 2.1 h 0.0 s 70.2% 3.1 h 54.6 m
2016/11/06 14:03:11: ERROR INFO 14:03:11,048 ProgressMeter - CHR_HSCHR3_8_CTG3:86998799 3.0523691051E10 2.2 h 0.0 s 70.5% 3.1 h 54.1 m
2016/11/06 14:03:41: ERROR INFO 14:03:41,088 ProgressMeter - CHR_HSCHR3_9_CTG3:3463323 3.0721986985E10 2.2 h 0.0 s 70.8% 3.1 h 53.6 m
2016/11/06 14:04:11: ERROR INFO 14:04:11,120 ProgressMeter - CHR_HSCHR3_9_CTG3:127202643 3.0721986985E10 2.2 h 0.0 s 71.0% 3.1 h 53.1 m
2016/11/06 14:04:41: ERROR INFO 14:04:41,208 ProgressMeter - CHR_HSCHR4_1_CTG12:48581823 3.0920278937E10 2.2 h 0.0 s 71.3% 3.1 h 52.6 m
2016/11/06 14:05:11: ERROR INFO 14:05:11,233 ProgressMeter - CHR_HSCHR4_1_CTG12:170432319 3.0920278937E10 2.2 h 0.0 s 71.6% 3.1 h 52.1 m