Lab Notebook

019_gatk_haplotypecaller CMD_019 003

DateTime: 2016-11-06T13:09:07

ProcessID: 31706

SchedulerID: 24608

2016/11/06 13:09:07: ERROR INFO 13:09:06,788 ProgressMeter - CHR_HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1:53571518 1.7521499218E10 75.1 m 0.0 s 40.5% 3.1 h 110.5 m
2016/11/06 13:09:36: ERROR INFO 13:09:36,809 ProgressMeter - CHR_HSCHR19KIR_FH05_B_HAP_CTG3_1:2575358 1.7697351657E10 75.6 m 0.0 s 40.8% 3.1 h 109.9 m
2016/11/06 13:10:06: ERROR INFO 13:10:06,837 ProgressMeter - CHR_HSCHR19KIR_FH06_BA1_HAP_CTG3_1:8960389 1.781465826E10 76.1 m 0.0 s 41.0% 3.1 h 109.3 m
2016/11/06 13:10:36: ERROR INFO 13:10:36,859 ProgressMeter - CHR_HSCHR19KIR_FH08_BAX_HAP_CTG3_1:13375309 1.7931879912E10 76.6 m 0.0 s 41.3% 3.1 h 108.8 m
2016/11/06 13:11:06: ERROR INFO 13:11:06,898 ProgressMeter - CHR_HSCHR19KIR_FH13_BA2_HAP_CTG3_1:16688068 1.8049144346E10 77.1 m 0.0 s 41.6% 3.1 h 108.3 m
2016/11/06 13:11:36: ERROR INFO 13:11:36,928 ProgressMeter - CHR_HSCHR19KIR_FH15_B_HAP_CTG3_1:22430670 1.8166424149E10 77.6 m 0.0 s 41.9% 3.1 h 107.7 m
2016/11/06 13:12:06: ERROR INFO 13:12:06,938 ProgressMeter - CHR_HSCHR19KIR_G085_BA1_HAP_CTG3_1:22015600 1.8283731034E10 78.1 m 0.0 s 42.2% 3.1 h 107.2 m
2016/11/06 13:12:36: ERROR INFO 13:12:36,957 ProgressMeter - CHR_HSCHR19KIR_G248_BA2_HAP_CTG3_1:25331796 1.8400952486E10 78.6 m 0.0 s 42.4% 3.1 h 106.7 m
2016/11/06 13:13:07: ERROR INFO 13:13:07,002 ProgressMeter - CHR_HSCHR19KIR_GRC212_BA1_HAP_CTG3_1:31356588 1.8518258165E10 79.1 m 0.0 s 42.7% 3.1 h 106.1 m
2016/11/06 13:13:37: ERROR INFO 13:13:37,028 ProgressMeter - CHR_HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1:39705565 1.8635478394E10 79.6 m 0.0 s 43.0% 3.1 h 105.5 m
2016/11/06 13:14:07: ERROR INFO 13:14:07,057 ProgressMeter - CHR_HSCHR19KIR_RSH_A_HAP_CTG3_1:43169101 1.8752741242E10 80.1 m 0.0 s 43.3% 3.1 h 105.0 m
2016/11/06 13:14:37: ERROR INFO 13:14:37,097 ProgressMeter - CHR_HSCHR19KIR_T7526_A_HAP_CTG3_1:45360599 1.8870021095E10 80.6 m 0.0 s 43.6% 3.1 h 104.5 m
2016/11/06 13:15:07: ERROR INFO 13:15:07,109 ProgressMeter - CHR_HSCHR19LRC_COX1_CTG3_1:51114401 1.8987269902E10 81.1 m 0.0 s 43.8% 3.1 h 103.9 m
2016/11/06 13:15:40: ERROR INFO 13:15:37,149 ProgressMeter - CHR_HSCHR19LRC_LRC_I_CTG3_1:58599096 1.9104105E10 81.6 m 0.0 s 44.1% 3.1 h 103.3 m
2016/11/06 13:16:07: ERROR INFO 13:16:07,218 ProgressMeter - CHR_HSCHR19LRC_LRC_T_CTG3_1:1615203 1.9280004328E10 82.1 m 0.0 s 44.4% 3.1 h 102.8 m
2016/11/06 13:16:37: ERROR INFO 13:16:37,238 ProgressMeter - CHR_HSCHR19LRC_PGF1_CTG3_1:58546031 1.9338565942E10 82.6 m 0.0 s 44.7% 3.1 h 102.3 m
2016/11/06 13:17:07: ERROR INFO 13:17:07,247 ProgressMeter - CHR_HSCHR19_1_CTG3_1:5750811 1.9514091415E10 83.1 m 0.0 s 44.9% 3.1 h 101.8 m
2016/11/06 13:17:37: ERROR INFO 13:17:37,288 ProgressMeter - CHR_HSCHR19_2_CTG3_1:11164563 1.9631343299E10 83.6 m 0.0 s 45.2% 3.1 h 101.2 m
2016/11/06 13:18:07: ERROR INFO 13:18:07,309 ProgressMeter - CHR_HSCHR19_3_CTG3_1:13758420 1.9748587723E10 84.1 m 0.0 s 45.5% 3.1 h 100.7 m
2016/11/06 13:18:37: ERROR INFO 13:18:37,368 ProgressMeter - CHR_HSCHR19_4_CTG3_1:16982052 1.9865833484E10 84.6 m 0.0 s 45.8% 3.1 h 100.2 m
2016/11/06 13:19:07: ERROR INFO 13:19:07,377 ProgressMeter - CHR_HSCHR1_1_CTG11:23712700 1.998307831E10 85.1 m 0.0 s 46.1% 3.1 h 99.6 m
2016/11/06 13:19:37: ERROR INFO 13:19:37,399 ProgressMeter - CHR_HSCHR1_1_CTG11:146391327 1.998307831E10 85.6 m 0.0 s 46.4% 3.1 h 99.1 m
2016/11/06 13:20:07: ERROR INFO 13:20:07,439 ProgressMeter - CHR_HSCHR1_1_CTG3:15710462 2.0232039849E10 86.1 m 0.0 s 46.6% 3.1 h 98.6 m
2016/11/06 13:20:37: ERROR INFO 13:20:37,478 ProgressMeter - CHR_HSCHR1_1_CTG3:143986125 2.0232039849E10 86.6 m 0.0 s 46.9% 3.1 h 98.0 m
2016/11/06 13:21:07: ERROR INFO 13:21:07,518 ProgressMeter - CHR_HSCHR1_1_CTG31:18148728 2.0481008255E10 87.1 m 0.0 s 47.2% 3.1 h 97.4 m
2016/11/06 13:21:37: ERROR INFO 13:21:37,558 ProgressMeter - CHR_HSCHR1_1_CTG31:135366809 2.0481008255E10 87.6 m 0.0 s 47.5% 3.1 h 96.9 m
2016/11/06 13:22:07: ERROR INFO 13:22:07,598 ProgressMeter - CHR_HSCHR1_1_CTG31:248973653 2.0481008255E10 88.1 m 0.0 s 47.7% 3.1 h 96.5 m
2016/11/06 13:22:37: ERROR INFO 13:22:37,657 ProgressMeter - CHR_HSCHR1_1_CTG32_1:126900801 2.0729981908E10 88.6 m 0.0 s 48.0% 3.1 h 95.9 m
2016/11/06 13:23:07: ERROR INFO 13:23:07,677 ProgressMeter - CHR_HSCHR1_2_CTG3:2760100 2.0978942051E10 89.1 m 0.0 s 48.3% 3.1 h 95.4 m
2016/11/06 13:23:37: ERROR INFO 13:23:37,697 ProgressMeter - CHR_HSCHR1_2_CTG3:119399510 2.0978942051E10 89.6 m 0.0 s 48.6% 3.1 h 94.9 m
2016/11/06 13:24:07: ERROR INFO 13:24:07,758 ProgressMeter - CHR_HSCHR1_2_CTG3:236923600 2.0978942051E10 90.1 m 0.0 s 48.9% 3.1 h 94.4 m
2016/11/06 13:24:37: ERROR INFO 13:24:37,788 ProgressMeter - CHR_HSCHR1_2_CTG31:108804003 2.1227917053E10 90.6 m 0.0 s 49.1% 3.1 h 93.8 m
2016/11/06 13:25:07: ERROR INFO 13:25:07,838 ProgressMeter - CHR_HSCHR1_2_CTG31:236269698 2.1227917053E10 91.1 m 0.0 s 49.4% 3.1 h 93.3 m
2016/11/06 13:25:37: ERROR INFO 13:25:37,867 ProgressMeter - CHR_HSCHR1_2_CTG32_1:105861700 2.1476888879E10 91.6 m 0.0 s 49.7% 3.1 h 92.7 m

2016/11/06 13:26:37: ERROR INFO 13:26:37,917 ProgressMeter - CHR_HSCHR1_3_CTG31:98372244 2.1725851367E10 92.6 m 0.0 s 50.3% 3.1 h 91.7 m
2016/11/06 13:27:07: ERROR INFO 13:27:07,939 ProgressMeter - CHR_HSCHR1_3_CTG31:227469236 2.1725851367E10 93.1 m 0.0 s 50.6% 3.1 h 91.1 m
2016/11/06 13:27:37: ERROR INFO 13:27:37,959 ProgressMeter - CHR_HSCHR1_3_CTG32_1:94346881 2.1974819276E10 93.6 m 0.0 s 50.8% 3.1 h 90.6 m
2016/11/06 13:28:08: ERROR INFO 13:28:08,008 ProgressMeter - CHR_HSCHR1_3_CTG32_1:218342530 2.1974819276E10 94.1 m 0.0 s 51.1% 3.1 h 90.1 m
2016/11/06 13:28:38: ERROR INFO 13:28:38,048 ProgressMeter - CHR_HSCHR1_4_CTG31:86447549 2.2223780037E10 94.6 m 0.0 s 51.4% 3.1 h 89.6 m
2016/11/06 13:29:08: ERROR INFO 13:29:08,068 ProgressMeter - CHR_HSCHR1_4_CTG31:210367447 2.2223780037E10 95.1 m 0.0 s 51.7% 3.1 h 89.0 m
2016/11/06 13:29:38: ERROR INFO 13:29:38,077 ProgressMeter - CHR_HSCHR1_4_CTG32_1:80924192 2.2472735668E10 95.6 m 0.0 s 51.9% 3.1 h 88.5 m
2016/11/06 13:30:08: ERROR INFO 13:30:08,107 ProgressMeter - CHR_HSCHR1_4_CTG32_1:202225000 2.2472735668E10 96.1 m 0.0 s 52.2% 3.1 h 88.0 m
2016/11/06 13:30:38: ERROR INFO 13:30:38,129 ProgressMeter - CHR_HSCHR1_ALT2_1_CTG32_1:73797389 2.2721694434E10 96.6 m 0.0 s 52.5% 3.1 h 87.5 m
2016/11/06 13:31:08: ERROR INFO 13:31:08,171 ProgressMeter - CHR_HSCHR1_ALT2_1_CTG32_1:201654735 2.2721694434E10 97.1 m 0.0 s 52.8% 3.1 h 86.9 m
2016/11/06 13:31:38: ERROR INFO 13:31:38,187 ProgressMeter - CHR_HSCHR20_1_CTG2:11977478 2.3035103483E10 97.6 m 0.0 s 53.1% 3.1 h 86.3 m
2016/11/06 13:32:08: ERROR INFO 13:32:08,237 ProgressMeter - CHR_HSCHR20_1_CTG4:3206673 2.3163992354E10 98.1 m 0.0 s 53.3% 3.1 h 85.8 m
2016/11/06 13:32:38: ERROR INFO 13:32:38,278 ProgressMeter - CHR_HSCHR21_2_CTG1_1:11529100 2.3275161376E10 98.6 m 0.0 s 53.6% 3.1 h 85.3 m
2016/11/06 13:33:08: ERROR INFO 13:33:08,297 ProgressMeter - CHR_HSCHR21_4_CTG1_1:41625512 2.3368593838E10 99.1 m 0.0 s 53.9% 3.1 h 84.8 m
2016/11/06 13:33:38: ERROR INFO 13:33:38,316 ProgressMeter - CHR_HSCHR21_8_CTG1_1:25863100 2.3508739189E10 99.6 m 0.0 s 54.2% 3.1 h 84.2 m
2016/11/06 13:34:08: ERROR INFO 13:34:08,337 ProgressMeter - CHR_HSCHR22_1_CTG2:49820498 2.3606258746E10 100.1 m 0.0 s 54.5% 3.1 h 83.7 m
2016/11/06 13:34:38: ERROR INFO 13:34:38,367 ProgressMeter - CHR_HSCHR22_1_CTG5:17516908 2.3758699543E10 100.6 m 0.0 s 54.7% 3.1 h 83.2 m
2016/11/06 13:35:08: ERROR INFO 13:35:08,388 ProgressMeter - CHR_HSCHR22_1_CTG7:38866600 2.3860363561E10 101.1 m 0.0 s 55.0% 3.1 h 82.6 m
2016/11/06 13:35:38: ERROR INFO 13:35:38,409 ProgressMeter - CHR_HSCHR22_4_CTG1:10015515 2.4012885364E10 101.6 m 0.0 s 55.3% 3.1 h 82.1 m
2016/11/06 13:36:08: ERROR INFO 13:36:08,448 ProgressMeter - CHR_HSCHR2_1_CTG1:25903900 2.4114523838E10 102.1 m 0.0 s 55.6% 3.1 h 81.6 m
2016/11/06 13:36:38: ERROR INFO 13:36:38,477 ProgressMeter - CHR_HSCHR2_1_CTG1:141616735 2.4114523838E10 102.6 m 0.0 s 55.9% 3.1 h 81.1 m