Lab Notebook

019_gatk_haplotypecaller CMD_019 002

DateTime: 2016-11-06T12:40:34

ProcessID: 31706

SchedulerID: 24608

2016/11/06 12:40:34: ERROR INFO 12:40:33,988 ProgressMeter - CHR_HSCHR11_3_CTG1:82953793 1.0526129539E10 46.6 m 0.0 s 24.4% 3.2 h 2.4 h
2016/11/06 12:41:04: ERROR INFO 12:41:04,018 ProgressMeter - CHR_HSCHR12_1_CTG1:66827500 1.0661221719E10 47.1 m 0.0 s 24.7% 3.2 h 2.4 h
2016/11/06 12:41:34: ERROR INFO 12:41:34,059 ProgressMeter - CHR_HSCHR12_1_CTG2:57598192 1.0794501043E10 47.6 m 0.0 s 25.0% 3.2 h 2.4 h
2016/11/06 12:42:04: ERROR INFO 12:42:04,188 ProgressMeter - CHR_HSCHR12_1_CTG2_1:46085208 1.0927782411E10 48.1 m 0.0 s 25.3% 3.2 h 2.4 h
2016/11/06 12:42:34: ERROR INFO 12:42:34,228 ProgressMeter - CHR_HSCHR12_2_CTG2:32691958 1.1061066879E10 48.6 m 0.0 s 25.5% 3.2 h 2.4 h
2016/11/06 12:43:04: ERROR INFO 12:43:04,239 ProgressMeter - CHR_HSCHR12_2_CTG2_1:24823615 1.1194374136E10 49.1 m 0.0 s 25.8% 3.2 h 2.3 h
2016/11/06 12:43:34: ERROR INFO 12:43:34,293 ProgressMeter - CHR_HSCHR12_3_CTG2:13791700 1.1327656494E10 49.6 m 0.0 s 26.1% 3.2 h 2.3 h
2016/11/06 12:44:04: ERROR INFO 12:44:04,339 ProgressMeter - CHR_HSCHR12_3_CTG2:133271566 1.1327656494E10 50.1 m 0.0 s 26.4% 3.2 h 2.3 h
2016/11/06 12:44:34: ERROR INFO 12:44:34,388 ProgressMeter - CHR_HSCHR12_3_CTG2_1:125264615 1.146092806E10 50.6 m 0.0 s 26.7% 3.2 h 2.3 h
2016/11/06 12:45:04: ERROR INFO 12:45:04,397 ProgressMeter - CHR_HSCHR12_4_CTG2:114652426 1.1594209546E10 51.1 m 0.0 s 27.0% 3.2 h 2.3 h
2016/11/06 12:45:34: ERROR INFO 12:45:34,422 ProgressMeter - CHR_HSCHR12_4_CTG2_1:101962997 1.1727487128E10 51.6 m 0.0 s 27.2% 3.2 h 2.3 h
2016/11/06 12:46:04: ERROR INFO 12:46:04,458 ProgressMeter - CHR_HSCHR12_5_CTG2:89757053 1.1860768479E10 52.1 m 0.0 s 27.5% 3.2 h 2.3 h
2016/11/06 12:46:34: ERROR INFO 12:46:34,498 ProgressMeter - CHR_HSCHR12_5_CTG2_1:79945687 1.1994043716E10 52.6 m 0.0 s 27.8% 3.2 h 2.3 h
2016/11/06 12:47:04: ERROR INFO 12:47:04,529 ProgressMeter - CHR_HSCHR12_6_CTG2_1:65788900 1.2127323194E10 53.1 m 0.0 s 28.1% 3.2 h 2.3 h
2016/11/06 12:47:34: ERROR INFO 12:47:34,558 ProgressMeter - CHR_HSCHR12_7_CTG2_1:53324425 1.2260598555E10 53.6 m 0.0 s 28.4% 3.1 h 2.3 h
2016/11/06 12:48:04: ERROR INFO 12:48:04,579 ProgressMeter - CHR_HSCHR13_1_CTG1:45091044 1.2393888033E10 54.1 m 0.0 s 28.6% 3.1 h 2.2 h
2016/11/06 12:48:34: ERROR INFO 12:48:34,599 ProgressMeter - CHR_HSCHR13_1_CTG2:52430200 1.2508236205E10 54.6 m 0.0 s 28.9% 3.1 h 2.2 h
2016/11/06 12:49:04: ERROR INFO 12:49:04,627 ProgressMeter - CHR_HSCHR13_1_CTG3:59287602 1.262260452E10 55.1 m 0.0 s 29.2% 3.1 h 2.2 h
2016/11/06 12:49:34: ERROR INFO 12:49:34,629 ProgressMeter - CHR_HSCHR13_1_CTG4:63743874 1.2736974746E10 55.6 m 0.0 s 29.5% 3.1 h 2.2 h
2016/11/06 12:50:04: ERROR INFO 12:50:04,672 ProgressMeter - CHR_HSCHR13_1_CTG5:71820400 1.2851343078E10 56.1 m 0.0 s 29.8% 3.1 h 2.2 h
2016/11/06 12:50:34: ERROR INFO 12:50:34,707 ProgressMeter - CHR_HSCHR13_1_CTG6:78863629 1.2965708428E10 56.6 m 0.0 s 30.0% 3.1 h 2.2 h
2016/11/06 12:51:04: ERROR INFO 12:51:04,747 ProgressMeter - CHR_HSCHR14_1_CTG1:85543300 1.3080075597E10 57.1 m 0.0 s 30.3% 3.1 h 2.2 h
2016/11/06 12:51:34: ERROR INFO 12:51:34,788 ProgressMeter - CHR_HSCHR14_2_CTG1:100012999 1.3187122974E10 57.6 m 0.0 s 30.6% 3.1 h 2.2 h
2016/11/06 12:52:04: ERROR INFO 12:52:04,799 ProgressMeter - CHR_HSCHR14_7_CTG1:9923094 1.340124173E10 58.1 m 0.0 s 30.9% 3.1 h 2.2 h
2016/11/06 12:52:34: ERROR INFO 12:52:34,829 ProgressMeter - CHR_HSCHR15_1_CTG1:26070592 1.3508287458E10 58.6 m 0.0 s 31.2% 3.1 h 2.2 h
2016/11/06 12:53:04: ERROR INFO 12:53:04,878 ProgressMeter - CHR_HSCHR15_1_CTG3:41503276 1.3610285733E10 59.1 m 0.0 s 31.4% 3.1 h 2.1 h
2016/11/06 12:53:34: ERROR INFO 12:53:34,889 ProgressMeter - CHR_HSCHR15_1_CTG8:62448376 1.371228039E10 59.6 m 0.0 s 31.7% 3.1 h 2.1 h
2016/11/06 12:54:04: ERROR INFO 12:54:04,907 ProgressMeter - CHR_HSCHR15_2_CTG3:84784419 1.3814283199E10 60.1 m 0.0 s 32.0% 3.1 h 2.1 h
2016/11/06 12:54:35: ERROR INFO 12:54:35,491 ProgressMeter - CHR_HSCHR15_3_CTG3:42400 1.4018282491E10 60.6 m 0.0 s 32.3% 3.1 h 2.1 h
2016/11/06 12:55:05: ERROR INFO 12:55:05,538 ProgressMeter - CHR_HSCHR15_3_CTG8:22287700 1.4120276254E10 61.1 m 0.0 s 32.6% 3.1 h 2.1 h
2016/11/06 12:55:35: ERROR INFO 12:55:35,579 ProgressMeter - CHR_HSCHR15_4_CTG8:43536295 1.422227597E10 61.6 m 0.0 s 32.8% 3.1 h 2.1 h
2016/11/06 12:56:05: ERROR INFO 12:56:05,627 ProgressMeter - CHR_HSCHR15_5_CTG8:64069544 1.4324347357E10 62.1 m 0.0 s 33.1% 3.1 h 2.1 h
2016/11/06 12:56:35: ERROR INFO 12:56:35,859 ProgressMeter - CHR_HSCHR15_6_CTG8:86755069 1.4426417635E10 62.6 m 0.0 s 33.4% 3.1 h 2.1 h
2016/11/06 12:57:05: ERROR INFO 12:57:05,899 ProgressMeter - CHR_HSCHR16_1_CTG3_1:19163912 1.4618366013E10 63.1 m 0.0 s 33.7% 3.1 h 2.1 h

2016/11/06 12:58:06: ERROR INFO 12:58:06,118 ProgressMeter - CHR_HSCHR16_3_CTG1:84017431 1.4799044729E10 64.1 m 0.0 s 34.3% 3.1 h 2.0 h
2016/11/06 12:58:36: ERROR INFO 12:58:36,158 ProgressMeter - CHR_HSCHR16_4_CTG1:27720254 1.4979731203E10 64.6 m 0.0 s 34.6% 3.1 h 2.0 h
2016/11/06 12:59:06: ERROR INFO 12:59:06,188 ProgressMeter - CHR_HSCHR16_CTG2:62631100 1.5070071572E10 65.1 m 0.0 s 34.8% 3.1 h 2.0 h
2016/11/06 12:59:36: ERROR INFO 12:59:36,190 ProgressMeter - CHR_HSCHR17_1_CTG1:10086507 1.5243772526E10 65.6 m 0.0 s 35.1% 3.1 h 2.0 h
2016/11/06 13:00:06: ERROR INFO 13:00:06,208 ProgressMeter - CHR_HSCHR17_1_CTG2:46803408 1.5327063021E10 66.1 m 0.0 s 35.4% 3.1 h 2.0 h
2016/11/06 13:00:36: ERROR INFO 13:00:36,219 ProgressMeter - CHR_HSCHR17_1_CTG5:4585896 1.5493584149E10 66.6 m 0.0 s 35.7% 3.1 h 2.0 h
2016/11/06 13:01:06: ERROR INFO 13:01:06,248 ProgressMeter - CHR_HSCHR17_1_CTG9:42759002 1.5577136814E10 67.1 m 0.0 s 36.0% 3.1 h 119.5 m
2016/11/06 13:01:36: ERROR INFO 13:01:36,277 ProgressMeter - CHR_HSCHR17_2_CTG1:79292200 1.5660392318E10 67.6 m 0.0 s 36.2% 3.1 h 118.9 m
2016/11/06 13:02:06: ERROR INFO 13:02:06,300 ProgressMeter - CHR_HSCHR17_2_CTG4:35076069 1.5826812034E10 68.1 m 0.0 s 36.5% 3.1 h 118.3 m
2016/11/06 13:02:36: ERROR INFO 13:02:36,348 ProgressMeter - CHR_HSCHR17_2_CTG5:75195187 1.5910075528E10 68.6 m 0.0 s 36.8% 3.1 h 117.8 m
2016/11/06 13:03:06: ERROR INFO 13:03:06,377 ProgressMeter - CHR_HSCHR17_3_CTG4:29346389 1.6076420094E10 69.1 m 0.0 s 37.1% 3.1 h 117.2 m
2016/11/06 13:03:36: ERROR INFO 13:03:36,407 ProgressMeter - CHR_HSCHR17_4_CTG4:68230321 1.6159689157E10 69.6 m 0.0 s 37.4% 3.1 h 116.7 m
2016/11/06 13:04:06: ERROR INFO 13:04:06,460 ProgressMeter - CHR_HSCHR17_6_CTG4:26108016 1.6326194172E10 70.1 m 0.0 s 37.7% 3.1 h 116.1 m
2016/11/06 13:04:36: ERROR INFO 13:04:36,477 ProgressMeter - CHR_HSCHR17_7_CTG4:67332189 1.6409440243E10 70.6 m 0.0 s 37.9% 3.1 h 115.5 m
2016/11/06 13:05:06: ERROR INFO 13:05:06,518 ProgressMeter - CHR_HSCHR17_9_CTG4:18743663 1.6575756945E10 71.1 m 0.0 s 38.2% 3.1 h 115.0 m
2016/11/06 13:05:36: ERROR INFO 13:05:36,527 ProgressMeter - CHR_HSCHR18_1_CTG1_1:60444880 1.6659020736E10 71.6 m 0.0 s 38.5% 3.1 h 114.4 m
2016/11/06 13:06:06: ERROR INFO 13:06:06,578 ProgressMeter - CHR_HSCHR18_1_CTG2_1:22722845 1.681978743E10 72.1 m 0.0 s 38.8% 3.1 h 113.8 m
2016/11/06 13:06:36: ERROR INFO 13:06:36,617 ProgressMeter - CHR_HSCHR18_2_CTG1_1:64556919 1.6900170101E10 72.6 m 0.0 s 39.1% 3.1 h 113.2 m
2016/11/06 13:07:06: ERROR INFO 13:07:06,659 ProgressMeter - CHR_HSCHR18_2_CTG2_1:20987065 1.7060992202E10 73.1 m 0.0 s 39.3% 3.1 h 112.8 m
2016/11/06 13:07:36: ERROR INFO 13:07:36,680 ProgressMeter - CHR_HSCHR18_3_CTG2_1:66787300 1.7141370922E10 73.6 m 0.0 s 39.6% 3.1 h 112.2 m
2016/11/06 13:08:06: ERROR INFO 13:08:06,737 ProgressMeter - CHR_HSCHR18_ALT21_CTG2_1:30119243 1.7302128367E10 74.1 m 0.0 s 39.9% 3.1 h 111.6 m
2016/11/06 13:08:36: ERROR INFO 13:08:36,739 ProgressMeter - CHR_HSCHR18_ALT2_CTG2_1:70541551 1.738250471E10 74.6 m 0.0 s 40.2% 3.1 h 111.0 m