Lab Notebook

019_gatk_haplotypecaller CMD_019 001

DateTime: 2016-11-06T12:11:32

ProcessID: 31706

SchedulerID: 24608

2016/11/06 12:11:32: ERROR INFO 12:11:31,658 ProgressMeter - CHR_HG151_NOVEL_TEST:44517221 3.590596221E9 17.5 m 0.0 s 8.4% 3.5 h 3.2 h
2016/11/06 12:12:01: ERROR INFO 12:12:01,688 ProgressMeter - CHR_HG1651_PATCH:25248427 3.725693917E9 18.0 m 0.0 s 8.6% 3.5 h 3.2 h
2016/11/06 12:12:31: ERROR INFO 12:12:31,707 ProgressMeter - CHR_HG1651_PATCH:151787350 3.725693917E9 18.5 m 0.0 s 8.9% 3.5 h 3.2 h
2016/11/06 12:13:01: ERROR INFO 12:13:01,712 ProgressMeter - CHR_HG1832_PATCH:98589294 3.896473567E9 19.0 m 0.0 s 9.2% 3.4 h 3.1 h
2016/11/06 12:13:31: ERROR INFO 12:13:31,748 ProgressMeter - CHR_HG1832_PATCH:218668384 3.896473567E9 19.5 m 0.0 s 9.5% 3.4 h 3.1 h
2016/11/06 12:14:01: ERROR INFO 12:14:01,777 ProgressMeter - CHR_HG2022_PATCH:26473411 4.204066229E9 20.0 m 0.0 s 9.7% 3.4 h 3.1 h
2016/11/06 12:14:31: ERROR INFO 12:14:31,807 ProgressMeter - CHR_HG2022_PATCH:153011320 4.204066229E9 20.5 m 0.0 s 10.0% 3.4 h 3.1 h
2016/11/06 12:15:01: ERROR INFO 12:15:01,829 ProgressMeter - CHR_HG2030_PATCH:75864130 4.40236217E9 21.0 m 0.0 s 10.3% 3.4 h 3.0 h
2016/11/06 12:15:31: ERROR INFO 12:15:31,859 ProgressMeter - CHR_HG2058_PATCH:55889267 4.540757035E9 21.5 m 0.0 s 10.6% 3.4 h 3.0 h
2016/11/06 12:16:01: ERROR INFO 12:16:01,898 ProgressMeter - CHR_HG2058_PATCH:174826000 4.540757035E9 22.0 m 0.0 s 10.9% 3.4 h 3.0 h
2016/11/06 12:16:31: ERROR INFO 12:16:31,947 ProgressMeter - CHR_HG2062_PATCH:46959746 4.789713457E9 22.5 m 0.0 s 11.1% 3.4 h 3.0 h
2016/11/06 12:17:01: ERROR INFO 12:17:01,977 ProgressMeter - CHR_HG2066_PATCH:111263797 4.846975629E9 23.0 m 0.0 s 11.4% 3.4 h 3.0 h
2016/11/06 12:17:31: ERROR INFO 12:17:31,998 ProgressMeter - CHR_HG2095_PATCH:34177900 5.045271184E9 23.5 m 0.0 s 11.7% 3.4 h 3.0 h
2016/11/06 12:18:02: ERROR INFO 12:18:02,045 ProgressMeter - CHR_HG2095_PATCH:153855100 5.045271184E9 24.0 m 0.0 s 12.0% 3.3 h 2.9 h
2016/11/06 12:18:32: ERROR INFO 12:18:32,089 ProgressMeter - CHR_HG2104_PATCH:21730129 5.294230315E9 24.5 m 0.0 s 12.2% 3.3 h 2.9 h
2016/11/06 12:19:02: ERROR INFO 12:19:02,137 ProgressMeter - CHR_HG2104_PATCH:149136400 5.294230315E9 25.0 m 0.0 s 12.5% 3.3 h 2.9 h
2016/11/06 12:19:32: ERROR INFO 12:19:32,150 ProgressMeter - CHR_HG2128_PATCH:21807286 5.543188574E9 25.5 m 0.0 s 12.8% 3.3 h 2.9 h
2016/11/06 12:20:02: ERROR INFO 12:20:02,188 ProgressMeter - CHR_HG2128_PATCH:144773873 5.543188574E9 26.0 m 0.0 s 13.1% 3.3 h 2.9 h
2016/11/06 12:20:32: ERROR INFO 12:20:32,209 ProgressMeter - CHR_HG2191_PATCH:94685424 5.714000258E9 26.5 m 0.0 s 13.4% 3.3 h 2.9 h
2016/11/06 12:21:02: ERROR INFO 12:21:02,248 ProgressMeter - CHR_HG2216_PATCH:85580464 5.847799737E9 27.0 m 0.0 s 13.7% 3.3 h 2.8 h
2016/11/06 12:21:32: ERROR INFO 12:21:32,289 ProgressMeter - CHR_HG2217_PATCH:92188423 5.962176165E9 27.5 m 0.0 s 13.9% 3.3 h 2.8 h
2016/11/06 12:22:02: ERROR INFO 12:22:02,351 ProgressMeter - CHR_HG2232_PATCH:77461794 6.097262786E9 28.0 m 0.0 s 14.2% 3.3 h 2.8 h
2016/11/06 12:22:32: ERROR INFO 12:22:32,378 ProgressMeter - CHR_HG2232_PATCH:204171001 6.097262786E9 28.5 m 0.0 s 14.5% 3.3 h 2.8 h
2016/11/06 12:23:02: ERROR INFO 12:23:02,418 ProgressMeter - CHR_HG2233_PATCH:80529215 6.339456315E9 29.0 m 0.0 s 14.8% 3.3 h 2.8 h
2016/11/06 12:23:32: ERROR INFO 12:23:32,439 ProgressMeter - CHR_HG2233_PATCH:200036500 6.339456315E9 29.5 m 0.0 s 15.1% 3.3 h 2.8 h
2016/11/06 12:24:02: ERROR INFO 12:24:02,468 ProgressMeter - CHR_HG2235_PATCH:75788500 6.58164985E9 30.0 m 0.0 s 15.3% 3.3 h 2.8 h
2016/11/06 12:24:32: ERROR INFO 12:24:32,894 ProgressMeter - CHR_HG2237_PATCH:221331 6.779945505E9 30.6 m 0.0 s 15.6% 3.3 h 2.8 h
2016/11/06 12:25:02: ERROR INFO 12:25:02,928 ProgressMeter - CHR_HG2237_PATCH:122562593 6.779945505E9 31.1 m 0.0 s 15.9% 3.3 h 2.7 h
2016/11/06 12:25:32: ERROR INFO 12:25:32,939 ProgressMeter - CHR_HG2239_PATCH:42279919 6.978235834E9 31.6 m 0.0 s 16.2% 3.3 h 2.7 h
2016/11/06 12:26:02: ERROR INFO 12:26:02,959 ProgressMeter - CHR_HG2241_PATCH:5953232 7.137581153E9 32.1 m 0.0 s 16.4% 3.2 h 2.7 h
2016/11/06 12:26:32: ERROR INFO 12:26:32,979 ProgressMeter - CHR_HG2241_PATCH:130671345 7.137581153E9 32.6 m 0.0 s 16.7% 3.2 h 2.7 h
2016/11/06 12:27:03: ERROR INFO 12:27:03,007 ProgressMeter - CHR_HG2242_HG2243_PATCH:117109698 7.271373875E9 33.1 m 0.0 s 17.0% 3.2 h 2.7 h
2016/11/06 12:27:33: ERROR INFO 12:27:33,067 ProgressMeter - CHR_HG2244_HG2245_PATCH:104613489 7.405171172E9 33.6 m 0.0 s 17.3% 3.2 h 2.7 h
2016/11/06 12:28:03: ERROR INFO 12:28:03,078 ProgressMeter - CHR_HG2247_PATCH:93625352 7.538968597E9 34.1 m 0.0 s 17.6% 3.2 h 2.7 h

2016/11/06 12:29:03: ERROR INFO 12:29:03,285 ProgressMeter - CHR_HG2288_HG2289_PATCH:90653500 7.786606808E9 35.1 m 0.0 s 18.1% 3.2 h 2.6 h
2016/11/06 12:29:33: ERROR INFO 12:29:33,298 ProgressMeter - CHR_HG2290_PATCH:95325285 7.900967202E9 35.6 m 0.0 s 18.4% 3.2 h 2.6 h
2016/11/06 12:30:03: ERROR INFO 12:30:03,329 ProgressMeter - CHR_HG2290_PATCH:218504948 7.900967202E9 36.1 m 0.0 s 18.7% 3.2 h 2.6 h
2016/11/06 12:30:33: ERROR INFO 12:30:33,362 ProgressMeter - CHR_HG2291_PATCH:91248473 8.143202471E9 36.6 m 0.0 s 19.0% 3.2 h 2.6 h
2016/11/06 12:31:03: ERROR INFO 12:31:03,380 ProgressMeter - CHR_HG23_PATCH:88803004 8.257736707E9 37.1 m 0.0 s 19.2% 3.2 h 2.6 h
2016/11/06 12:31:33: ERROR INFO 12:31:33,428 ProgressMeter - CHR_HG986_PATCH:68122600 8.391011891E9 37.6 m 0.0 s 19.5% 3.2 h 2.6 h
2016/11/06 12:32:03: ERROR INFO 12:32:03,440 ProgressMeter - CHR_HG986_PATCH:182401900 8.391011891E9 38.1 m 0.0 s 19.7% 3.2 h 2.6 h
2016/11/06 12:32:33: ERROR INFO 12:32:33,467 ProgressMeter - CHR_HSCHR10_1_CTG1:45731500 8.63996853E9 38.6 m 0.0 s 20.0% 3.2 h 2.6 h
2016/11/06 12:33:03: ERROR INFO 12:33:03,498 ProgressMeter - CHR_HSCHR10_1_CTG2:27626366 8.773813252E9 39.1 m 0.0 s 20.3% 3.2 h 2.6 h
2016/11/06 12:33:33: ERROR INFO 12:33:33,518 ProgressMeter - CHR_HSCHR10_1_CTG3:8757824 8.907626737E9 39.6 m 0.0 s 20.5% 3.2 h 2.6 h
2016/11/06 12:34:03: ERROR INFO 12:34:03,539 ProgressMeter - CHR_HSCHR10_1_CTG3:127225902 8.907626737E9 40.1 m 0.0 s 20.8% 3.2 h 2.5 h
2016/11/06 12:34:33: ERROR INFO 12:34:33,577 ProgressMeter - CHR_HSCHR10_1_CTG4:115131797 9.041409955E9 40.6 m 0.0 s 21.1% 3.2 h 2.5 h
2016/11/06 12:35:03: ERROR INFO 12:35:03,618 ProgressMeter - CHR_HSCHR11_1_CTG1_1:105418874 9.175225774E9 41.1 m 0.0 s 21.4% 3.2 h 2.5 h
2016/11/06 12:35:33: ERROR INFO 12:35:33,647 ProgressMeter - CHR_HSCHR11_1_CTG1_2:90559287 9.310318129E9 41.6 m 0.0 s 21.6% 3.2 h 2.5 h
2016/11/06 12:36:03: ERROR INFO 12:36:03,689 ProgressMeter - CHR_HSCHR11_1_CTG2:74158285 9.445414877E9 42.1 m 0.0 s 21.9% 3.2 h 2.5 h
2016/11/06 12:36:33: ERROR INFO 12:36:33,747 ProgressMeter - CHR_HSCHR11_1_CTG3:62292255 9.580498475E9 42.6 m 0.0 s 22.2% 3.2 h 2.5 h
2016/11/06 12:37:03: ERROR INFO 12:37:03,778 ProgressMeter - CHR_HSCHR11_1_CTG5:48502896 9.71558875E9 43.1 m 0.0 s 22.5% 3.2 h 2.5 h
2016/11/06 12:37:33: ERROR INFO 12:37:33,798 ProgressMeter - CHR_HSCHR11_1_CTG6:32109032 9.850686005E9 43.6 m 0.0 s 22.8% 3.2 h 2.5 h
2016/11/06 12:38:03: ERROR INFO 12:38:03,819 ProgressMeter - CHR_HSCHR11_1_CTG7:20716600 9.985778337E9 44.1 m 0.0 s 23.0% 3.2 h 2.5 h
2016/11/06 12:38:33: ERROR INFO 12:38:33,860 ProgressMeter - CHR_HSCHR11_1_CTG8:7123584 1.0120863821E10 44.6 m 0.0 s 23.3% 3.2 h 2.4 h
2016/11/06 12:39:03: ERROR INFO 12:39:03,882 ProgressMeter - CHR_HSCHR11_1_CTG8:125663649 1.0120863821E10 45.1 m 0.0 s 23.6% 3.2 h 2.4 h
2016/11/06 12:39:33: ERROR INFO 12:39:33,909 ProgressMeter - CHR_HSCHR11_2_CTG1:113750058 1.0255952254E10 45.6 m 0.0 s 23.9% 3.2 h 2.4 h
2016/11/06 12:40:03: ERROR INFO 12:40:03,948 ProgressMeter - CHR_HSCHR11_2_CTG1_1:99833904 1.0391045698E10 46.1 m 0.0 s 24.2% 3.2 h 2.4 h