2016/11/06 12:10:13: DEBUG Enqueuing command:
#TASK tags=Sample_5
mkdir -p /scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/freebayes && \
vcffilter -f “QUAL > 1 & QUAL / AO > 10 & SAF > 0 & SAR > 0 & RPR > 1 & RPL > 1” \
/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/freebayes/Sample_5_freebayes_raw.vcf > /scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/freebayes/Sample_5_filtered.freebayes.vcf
2016/11/06 12:10:14: INFO Total execution time 0 years, 00 months, 0 days, 00 hours, 00 minutes, 01 seconds