2016/11/06 09:51:57: DEBUG Enqueuing command:
#TASK tags=Sample_5
picard -Xmx2g AddOrReplaceReadGroups \
I=/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/picard/Sample_5_csorted.cleaned.aligned.bam \
O=/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/picard/Sample_5_withrg.csorted.cleaned.aligned.bam \
SORT_ORDER=coordinate RGID=1 RGLB=1 RGPL=illumina RGPU=unit1 RGSM=Sample_5 RGCN=NYUAD
2016/11/06 09:52:08: INFO Total execution time 0 years, 00 months, 0 days, 00 hours, 00 minutes, 11 seconds