Lab Notebook

Process Table

|Version| Scheduler Id | Jobname | Task Tags | ProcessID | ExitCode | Duration |
|0.05|24591|002_samtools_view|Sample_5|20703|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 09 seconds|
|0.05|24595|006_samtools_sort|Sample_5|14714|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 03 seconds|
|0.05|24594|005_remove_SAM|Sample_5|21714|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 00 seconds|
|0.05|24592|003_picard_cleansam|Sample_5|21713|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 20 seconds|
|0.05|24593|004_picard_sortsam|Sample_5|22037|-1|0 years, 00 months, 0 days, 00 hours, 00 minutes, 09 seconds|
|0.05|24596|007_picard_add_or_replace_groups|Sample_5|22362|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 11 seconds|
|0.05|24598|009_picard_collect_multiple_metrics|Sample_5|22360|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 19 seconds|
|0.05|24597|008_picard_bamindex|Sample_5|22979|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 06 seconds|
|0.05|24599|010_picard_markdups|Sample_5|22982|-1|0 years, 00 months, 0 days, 00 hours, 00 minutes, 16 seconds|
|0.05|24600|011_samtools_mpileup|Sample_5|21822|0|0 years, 00 months, 0 days, 00 hours, 03 minutes, 43 seconds|
|0.05|24601|012_tabix_index|Sample_5|23755|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 01 seconds|
|0.05|24602|013_bcftools_filter|Sample_5|24080|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 00 seconds|
|0.05|24603|014_bcftools_stats|Sample_5|24083|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 04 seconds|
|0.05|24604|015_gatk_realigner_target_creator|Sample_5|23338|0|0 years, 00 months, 0 days, 00 hours, 119 minutes, 27 seconds|
|0.05|24605|016_gatk_indel_realigner|Sample_5|30992|0|0 years, 00 months, 0 days, 00 hours, 01 minutes, 34 seconds|
|0.05|24606|017_freebayes_vcf_calling|Sample_5|31705|0|0 years, 00 months, 0 days, 00 hours, 16 minutes, 10 seconds|
|0.05|24607|018_freebayes_vcffilter|Sample_5|1026|0|0 years, 00 months, 0 days, 00 hours, 00 minutes, 01 seconds|
|0.05|24608|019_gatk_haplotypecaller|Sample_5|31706|-1|0 years, 00 months, 0 days, 00 hours, 183 minutes, 37 seconds|
|0.05|24609|020_gatk_variant_filtration|Sample_5|7774|-1|0 years, 00 months, 0 days, 00 hours, 00 minutes, 04 seconds|