2016/11/06 09:51:23: INFO Starting Job: 11
Cmd is #TASK tags=Sample_5
samtools mpileup -ugf /scratch/Reference_Genomes/Public/Vertebrate_mammalian/Homo_sapiens/ENSEMBL-release-81-GRCh38/Homo_sapiens.GRCh38.dna.toplevel.fa \
/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/samtools/Sample_5_aligned.sorted.bam | bcftools call -vmO z -o \
/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/samtools/Sample_5_aligned.sorted.vcf.gz
2016/11/06 09:51:23: ERROR [mpileup] 1 samples in 1 input files
2016/11/06 09:51:23: ERROR Note: Neither –ploidy nor –ploidy-file given, assuming all sites are diploid
2016/11/06 09:51:23: ERROR
2016/11/06 09:55:06: INFO Finishing job 11 with ExitCode 0
2016/11/06 09:55:06: INFO Total execution time 0 years, 00 months, 0 days, 00 hours, 03 minutes, 43 seconds