2016/11/06 09:51:23: DEBUG Enqueuing command:
#TASK tags=Sample_5
samtools mpileup -ugf /scratch/Reference_Genomes/Public/Vertebrate_mammalian/Homo_sapiens/ENSEMBL-release-81-GRCh38/Homo_sapiens.GRCh38.dna.toplevel.fa \
/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/samtools/Sample_5_aligned.sorted.bam | bcftools call -vmO z -o \
/scratch/gencore/nov_dalma_training/resequencing/data/analysis/Sample_5/samtools/Sample_5_aligned.sorted.vcf.gz
2016/11/06 09:55:06: INFO Total execution time 0 years, 00 months, 0 days, 00 hours, 03 minutes, 43 seconds